----------------------------------------------------
Subject: SMB Digest v12i37

SMB Digest      September 11, 2012   Volume 12  Issue 37
ISSN 1086-6566

Editor: Ray Mejía ray(at)smb(dot)org

Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
http://www.smb.org/ .

Access the Bulletin of Mathematical Biology, the official journal of SMB, at
http://www.springer.com/11538 .

Inquiries about membership or BMB fulfillment should be sent to
membership(at)smb(dot)org .

Issue's Topics:
   5th International Symposium on Biomathematics and Ecology ...
   Workshop: Math Models of Tumor-Immune..., Jan 7-10, Sydney
   Dynamics Days US 2013 - Denver, CO (Jan 3-6)
   Book Announcement: A Life Scientist's Guide to Physical Chemistry
   Program Solicitation: Expeditions in Training, Research ...
   Postdoc: Mathematical Modelling, University of Essex
   Postdoc Positions: Ecole Normale Superieure, Paris in Holcman's group
   Postdoc: Mathematical Modelling, INRA-Angers University (France)
   Postdoc: Biomathematics & Computational Biology
   Assistant Professor: Global Health/Infectious Disease, Georgetown U
   Tenure-track Position: Computational Biology & Bioinformatics
   Biologist III / Biologist IV: Fish Scientist, Cramer Fish Sciences
   Computational Modeling Scientist: St. Jude Children's Research Hosp
   NIH Research and other Scientific/Clinical Positions, September Update
   SMBnet Reminders


----------------------------------------------------

From: Hannah Callender <callende@up.edu>
Date: Wed, Sep 5, 2012 at 6:23 PM
Subject: 5th International Symposium on Biomathematics and Ecology ...

5th International Symposium on Biomathematics and Ecology: Education and
Research (BEER-2012)

November 9-11, 2012, St. Louis, Missouri, USA.

www.biomath.ilstu.edu/beer


----------------------------------------------------

From: ELADDADI, AMINA <eladdada@mail.strose.edu>
Date: Fri, Sep 7, 2012 at 8:45 PM
Subject: Workshop: Math Models of Tumor-Immune..., Jan 7-10, Sydney

US- Sydney International Workshop on Mathematical Models of
Tumor-Immune System Dynamics, January 7-10, 2013, Australia.

Website: https://sites.google.com/site/sydneytumorimmune

We are pleased to announce a four-day workshop on Mathematical Models
of Tumor-Immune System Dynamics to be held at the University of Sydney,
Australia from January 7th  to January 10th, 2013.

The workshop will include plenary lectures by leading researchers in
tumor-immune system dynamics, parallel sessions of contributed/invited talks
by senior and junior scientists, a poster session for graduate students, and
a panel discussion on how to foster  and sustain international collaborations
in this highly multidisciplinary field of cancer immunology.

Our Keynote Speaker: Distinguished Prof. Avner Friedman, Mathematical
Biosciences Institute, The Ohio State University, USA

Confirmed Plenary Speakers:
Gib Bogle, Auckland Bioengineering Institute, The University of Auckland, NZ
Lisette de Pillis, Harvey Mudd College, USA
Marcello Delitala, Politecnico di Torino, Italy
Trachette Jackson, University of Michigan, USA
Doron Levy, University of Maryland, USA
Dr. Adekunle "Kunle" Odunsi, Roswell Park Cancer Institute, USA
Ami Radunskaya, Pomona College, USA
Sarah Russell, Peter MacCallun Cancer Centre, Australia
Chris Schmidt, Queensland Institute of Medical Research, Australia

Financial Support will be available for US-based scholars from NSF
(pending). We strongly encourage the participation from women and minorities,
PhD students, post-docs, and junior researchers.

For more information please check the workshop website:
https://sites.google.com/site/sydneytumorimmune
Abstract submission is now open. Please use this link to submit your abstract:
http://atlas-conferences.com/cgi-bin/abstract/cbff-01

The workshop organizing team:
Amina Eladdadi, The College of Saint Rose, Albany, NY
Peter Kim, The University of Sydney, Australia
Dann Mallet, Queensland University of Technology, Australia


----------------------------------------------------

From: Juan G. Restrepo <ddays2013@gmail.com>
Date: Sun, Sep 9, 2012 at 10:48 PM
Subject: Dynamics Days US 2013 - Denver, CO (Jan 3-6)

The Department of Applied Mathematics at the University of Colorado at
Boulder announces:

Dynamics Days US 2013
January 3-6, 2013
Marriott City Center, Denver, Colorado
http://amath.colorado.edu/conferences/DDays2013

Dynamics Days is an international conference on nonlinear dynamics, chaos and
its applications. Talks will cover a broad range of topics, including fluid
dynamics, dynamics on networks, biological systems, synchronization of
nonlinear systems, and pattern formation. 

Dynamics Days US 2013 will take place in the Marriott City Center in downtown
Denver, Colorado, from Thursday, January 3 to Sunday, January 6, 2013. The
invited speakers are (click on a name to get more information)

Peter Ashwin, University of Exeter
Bob Behringer, Duke University
David Christini, Cornell University
Aaron Clauset, University of Colorado at Boulder

Itai Cohen, Cornell University

Raissa D?Souza, University of California, Davis
Jay Fineberg, The Hebrew University of Jerusalem

Michelle Girvan, University of Maryland

Leon Glass, McGill University

Dan Goldman, Georgia Tech

Hans Herrmann, ETH Zürich
Keith Julien, University of Colorado at Boulder
Eleni Katifori, Max-Planck Institute for Dynamics and Self-Organization

Dan Lathrop, University of Maryland

Mark Miesch, High Altitude Observatory, NCAR

Mark Newman, University of Michigan

Tom Peacock, MIT
Dietmar Plenz, National Institutes of Health

Mike Schatz, Georgia Tech
Glen Stewart, University of Colorado at Boulder

Wendy Zhang, University of Chicago

There will be additional talks and poster presentations selected from
contributed abstracts.

For further information about the conference program, online registration,
abstract submission, and travel support for graduate students and postdocs,
please visit the conference website:  
http://amath.colorado.edu/conferences/DDays2013 
or contact us at  ddays2013@colorado.edu

Registration, abstract submission and hotel registration with the conference
rate are open. 

Deadlines:
   Abstract submission: November 9th
   Hotel Reservation: December 12th
   Early Registration: December 12th

Conference fees:
   Early Registration (by Dec 12th): $125 for students/postdocs,
   $200 for faculty
  Late Registration: $175 for students/postdocs, $275 for faculty

We anticipate that we will be able to offer a number of travel awards for
students and postdocs. Please indicate your desire to be considered for
such an award when submitting an abstract. Notifications of travel support
award decisions will be sent by email at the end of November.

We encourage you to print out and post a copy of the conference announcement
poster available at:
http://amath.colorado.edu/conferences/DDays2013/poster.pdf 

We hope to see you in Denver in January,

The organizing committee,

Juan G. Restrepo, Jim Meiss, Liz Bradley, Randy Tagg, Ed Ott, Alain Karma,
Katepalli Sreenivasan.

Funding:
   Applied Mathematics, CU Boulder
   Office of the Vice Chancellor for Research, CU Boulder,
   ARO
   APS-GSNP
   ONR (anticipated)
   Additional funding pending


----------------------------------------------------

From: Roussel, Marc <roussel@uleth.ca>
Date: Fri, Sep 7, 2012 at 2:00 AM
Subject: Book Announcement: A Life Scientist's Guide to Physical Chemistry

A Life Scientist's Guide to Physical Chemistry
by Marc R. Roussel
Cambridge University Press, 2012

This new textbook is intended to teach the basic principles of physical
chemistry and to convey the relevance of this material to life science
students.  The book contains many interesting and surprising biological
examples, such as the physical chemistry underlying the ability of
the wood frog to survive overwintering in the frozen state, and the
physico-chemical evidence for the remarkable longevity of the bowhead
whale. It contains a large number of exercises (350+), many based on
biological applications. The exercises aren't confined to the ends of
chapters. Rather, they are distributed within the chapters to encourage
students to study continuously. There's also a selection of end-of-term
problems at the very end of the book that is intended to help prepare
students for a final exam. Answers to every single exercise, except for the
end-of-term exercises, are included in the book.  Fully worked solutions
and answers to the end-of-term review problems are available to instructors
(password protected) at http://www.cambridge.org/roussel.

The readers of this mailing list can purchase a copy of this textbook
at a 20% discount between now and the end of the year by following this
link: http://www.cambridge.org/knowledge/discountpromotion?code=L2ROUS


----------------------------------------------------

From: Henry Warchall <hwarchal@nsf.gov>
Date: Sat, Sep 8, 2012 at 2:29 AM
Subject: Program Solicitation: Expeditions in Training, Research ...

Dear Colleagues,

A new NSF program solicitation is now available:

Expeditions in Training, Research, and Education for Mathematics and
Statistics through Quantitative Explorations of Data (EXTREEMS-QED)

Please see
http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504765&org=DMS&from=home
for details.

Full Proposal Deadline Date: December 14, 2012


----------------------------------------------------

From: Codling, Edward <ecodling@essex.ac.uk>
Date: Thu, Sep 6, 2012 at 6:48 AM
Subject: Postdoc: Mathematical Modelling, University of Essex

POSTDOCTORAL RESEARCH ASSISTANT (MODELLING)
Department of Mathematical Sciences, University of Essex, UK

Ref     RE760
Location: Colchester, UK
Salary in the range £30,122-£31,948 per annum
Closing date for applications: 03/10/12

Applications are invited for a 3.25 year (39 months) fixed-term
postdoctoral research assistant (PDRA) position to work on the BBSRC
funded inter-disciplinary project "Assessment of Dairy Cow Welfare through
Predictive Modelling of Individual and Social Behaviour". The project
is jointly led by Writtle College (animal behaviour and data collection)
and the University of Essex (modelling and data analysis).

Dairy cow welfare is increasingly a subject of public concern and a major
challenge is to develop methods of automating the detection of welfare
problems such as lameness and mastitis. In this project we will use automated
data collection techniques to record patterns of space use, movement, and
social interactions within commercial dairy herds. The behavioural data
will be analysed using modelling techniques such as social network analysis
and hidden Markov models. Using information about the observed changes in
both individual cow behaviour and herd social structure we will develop a
predictive model for the onset of disease and other welfare changes within
individual cows. This will lead to the development of an on-farm automated
'early warning' system for disease detection. Such a system would be
invaluable for improving the welfare and productivity of dairy cows.

The project will be undertaken in conjunction with Dr Jonathan Amory
(Writtle College) and Dr Nick Bell (RVC) who will collect the cow behavioural
data, and Dr Darren Croft (Exeter) who will assist with the social network
analysis. The modelling PDRA will be based at the University of Essex and will
be responsible for the mathematical modelling and data analysis elements of
the project. The modelling PDRA will be expected to work closely throughout
the project with the animal behaviour PDRA based at Writtle College. For the
final 3 months of the project the modelling PDRA will undertake a placement
with our industry project partner, Omnisense Limited, in Cambridge.

The ideal candidate will have a PhD with a strong background in mathematical
modelling, statistics, data analysis, computational sciences or similar.
Candidates from a biological sciences background may also be suitable if
they can demonstrate strong mathematical, statistical and computational
expertise.  Knowledge and experience of modelling animal behaviour
processes is desirable, as is familiarity with computer programming using
the R language. As the candidate will be working on an inter-disciplinary
project, strong interpersonal and communication skills are essential,
as well as the ability to work in a team to produce research outcomes.

The PDRA will join the Theoretical Ecology group led by Dr Edward A. Codling
and based in the Department of Mathematical Sciences at the University
of Essex (Colchester campus). The PDRA will be expected to attend regular
meetings with the other members of the project and to attend national and
international conferences, for which there is a travel allowance as part
of the project.

The post will commence on 1 November 2012 or as soon as possible thereafter
and appointment will be made as Senior Research Officer.

For further information and links to apply online please visit
http://gs12.globalsuccessor.com/fe/tpl_essex01.asp?newms=jj&id=66425

Informal enquiries may be addressed to ecodling@essex.ac.uk


----------------------------------------------------

From: <holcman@biologie.ens.fr>
Date: Thu, Sep 6, 2012 at 3:51 AM
Subject: Postdoc Positions: Ecole Normale Superieure, Paris in Holcman's group

Paris, August 18nd 2012

Postdoc position available in mathematics and computational biophysics

The group of D. Holcman dedicated to mathematics and computational biology
is looking for a postdoc fellow interested in modeling and analysis of
atrial fibrillation (see description below). The work involves modeling,
simulations, data analysis and signal processing.

The candidate for this position will be expected to be very strongly
motivated by mathematical sciences, biophysics and biological sciences. The
candidate should have a PhD in partial differential equation, modeling or
applied probability and be passionate by her/his research. We also expect
that the candidate has already demonstrated an usual ability to publish in
leading journals.

ENS is a top international institution, located in the center of Paris,
with a long tradition of excellence in research. The review process will
continue until the position is filled. ENS is an affirmative action, equal
opportunity employer. Applicants should send:

- a letter of application,
- current vitae
- two letters of recommendation addressed directly to:

David Holcman
46, rue d'Ulm
75005 Paris
France
david.holcman@ens.fr


Summary: Atrial fibrillation (AF) is the most common cardiac arrhythmia
(abnormal heart rhythm). Instead of a coordinated contraction, the heart
muscles of the atria are not working in synchrony. In AF, the normal
electrical impulses that are generated by the sinoatrial node are overwhelmed
by disorganized electrical impulses that originate in the atria and pulmonary
veins, leading to conduction of irregular impulses to the ventricles that
generate the heartbeat.  The result is an irregular heartbeat which may
occur in episodes lasting from minutes to weeks, or it could occur all
the time for years. The natural tendency of AF is to become a chronic
condition. Chronic AF leads to an increase in the risk of death and stroke.

We propose to model AF, starting from the electrical properties of the
heart tissue, to analyze the bifurcation in the derived model, to study the
complex patterning occurring in the surface of the heart, to identify the
related features observed in the electrocardiogram. The project should aim
to produce numerical simulations that will be used to diagnose early signs
of AF, so that early decision could be taken at the medical level. A data
base would be available to test potential predictions.

This project brings together on one hand the groups of Pr. A. Cohen ,
cardiologist from Hosp. St Antoine (Paris, France), which has accumulated an
expertise in AF, having collected a pool of data about AF and on the other
hand, the group of mathematical modeling of Pr. D. Holcman, specialized
in applied mathematics, biophysical modeling, random stochastic dynamical
systems and numerical simulations.


Position 2: Postdoc position available in mathematics and computational
biophysics

The group of D. Holcman dedicated to mathematics and computational biology is
looking for a postdoc fellow interested in stochastic modeling of anisotropic
objects evolving in empirical data related to motion in live cell tissue. The
work involves stochastic processes, PDE analysis, asymptotic analysis and
image processing.

The candidate for this position is expected to be strongly motivated by
mathematical sciences, biophysics and biological sciences. The candidate
should have a PhD in partial differential equation, modeling or applied
probability and be passionate by her/his research. We also expect that the
candidate has already demonstrated a usual ability to publish in leading
journals.

ENS is a top international institution, located in the center of Paris,
with a long tradition of excellence in research. The review process will
continue until the position is filled. ENS is an affirmative action, equal
opportunity employer. Applicants should send:

- a letter of application,
- current vitae
- two letters of recommendation addressed directly to:

David Holcman
46, rue d'Ulm
75005 Paris
France
david.holcman@ens.fr


----------------------------------------------------

From: sapoukhi <sapoukhi@angers.inra.fr>
Date: Fri, Sep 7, 2012 at 10:42 AM
Subject: Postdoc: Mathematical Modelling, INRA-Angers University (France)

POSTDOCTORAL POSITION: Modelling secondary contacts between divergent
populations in heterogeneous environments for studying the role of coupling
genetic barriers in disease emergence


The Research Unit of Evolutionary Ecology of Fungal Pathosystems (EcoFun)
at the IRHS (Research Institute of Horticulture and Seeds, University
of Angers, INRA, Agrocampus-Ouest) invites applications for a one-year
postdoctoral position in the field of theoretical spatial genetics. This
position may be renewed for an additional year based upon the availability
of funds. The position is available from the February 2013 (with a flexible
start date). The net salary will be approximately of 24,000 Euros per year.

Global exchanges and climatic changes play a determinant role in the emergence
of human, animal and plant diseases. Secondary contacts between divergent
pathogen populations can favour the occurrence of new recombinants that are
potentially more aggressive or resistant to treatments. Conventionally,
potential for hybridization (and then recombination) within pathogen
populations is linked to the presence of exogenous (host-dependent)
genetic barriers, and the role of host-independent, so-called endogenous,
genetic barriers is less investigated. Recently, one-dimensional models have
shown that such endogenous barriers are numerous and tend to be spatially
correlated. This process is called coupling. It does not exist any spatially
explicit model which tests whether spatial heterogeneity of habitats can
maximise the coupling. In the case of pathogens, maximising the coupling
effects would reduce the risk of emergence of recombinants. The goal of the
project is to build a parsimonious spatially explicit model of behaviour
of endogenous and exogenous genetic barriers occurring in a heterogeneous
environment. The project constitutes a new conceptual approach in the
understanding of mechanisms of reproductive isolation in pathogens and the
emergence of new infectious diseases.

The successful candidate is expected to develop and validate the model. The
candidate will collaborate with experimentalists working on pathogen genetics
towards designing well-suited strategies of geographical deployment of
resistant cultivars that could prevent rapid pathogen evolution and spread.

A desirable candidate with a strong (Ph.D.) mathematical background
and experienced in theoretical population genetics will have good
computer programming skills as well as a real interest in evolutionary
epidemiology. The candidate should also have good interaction capability
with experimentalists and a proven record of independent research.

Successful applicants will join an active research team that spans many
areas of plant pathology, genetics, and mathematical biology. Our unit
studies the evolutionary processes of pathogen adaptation to resistant
cultivars carrying quantitative and qualitative resistance, with the aim
to improve the resistance durability.

Applicants should forward, no later than the 30th November, 2012, a cover
letter detailing motivation, training, work experience and future plans, a
curriculum vitae, a publications list, and three references or recommendation
letters to Dr. Christophe Lemaire, christophe.lemaire@univ-angers.fr and
Dr. Natalia Sapoukhina natalia.sapoukhina@angers.inra.fr.


----------------------------------------------------

From: Perno, Debra <Debra_Perno@urmc.rochester.edu>
Date: Mon, Sep 10, 2012 at 3:25 PM
Subject: Postdoc: Biomathematics & Computational Biology

Postdoctoral Position in Biomathematics and Computational Biology Center for
Integrative Bioinformatics and Experimental Mathematics in the Department of
Biostatistics and Computational Biology, University of Rochester School of
Medicine and Dentistry has an immediate opening for a postdoctoral position
in biomathematics and computational biology. We are looking for a creative
and collaborative individual to join our dynamic research group for modeling
immune systems and infectious diseases. The applicant should have a Ph.D. in
biomathematics, computational or theoretical biology, applied mathematics,
computational engineering, or other related scientific disciplines. Expertise
and background in complex dynamic systems with biomedical applications, in
particular, in immunology and infectious diseases, is desirable. Demonstrated
evidence of good computational skills and capability of methodological
research is essential. The postdoctoral appointment is one year with possible
renewal for more years subject to performance and funding availability. The
scientific environment is conducive to professional development for those
anticipating a career in both academic setting and applied industrial
setting. This is a unique opportunity for well-trained individuals interested
in both methodological and applied research. University of Rochester is an
AA/EOE employer. Applications from women and minorities are encouraged to
apply. Please send your CV, three references and other supporting materials to

Dr. Hulin Wu
C/O: Ms. Debra Perno (Job Code: Biomath-postdoc)
Department of Biostatistics and Computational Biology,
University of Rochester School of Medicine and Dentistry,
601 Elmwood Avenue, Box 630,
Rochester, NY 14642.
Email: debra perno@,urmc.rochester.edu


----------------------------------------------------

From: Shweta Bansal <shweta@sbansal.com>
Date: Thu, Sep 6, 2012 at 9:55 AM
Subject: Assistant Professor: Global Health/Infectious Disease, Georgetown U

The Department of Biology, Georgetown University, invites applications
for a tenure-track position at the assistant professor level commencing
in August 2013. We seek applicants whose research efforts are in the
area of infectious disease. This position is expected to complement
ongoing research and teaching efforts in global health at Georgetown
University, including a graduate program in Global Infectious Disease and
an undergraduate major in the Biology of Global Health. The successful
candidate will be expected to teach one course per semester, mentor
undergraduates, graduate students and post-doctoral fellows, and maintain
an active, extramurally-funded research program. Department information
can be found at http://biology.georgetown.edu/. Candidates should submit
a letter of application, curriculum vitae, a detailed description of
previous research accomplishments and future research plans, a statement of
teaching philosophy, and the names and contact information for three or more
references. Application materials should be submitted electronically in PDF
format (preferred) to biology@georgetown.edu with "Biology Application" as
subject. We will begin review of applications on November 15, 2012.

Georgetown University is an Equal Opportunity, Affirmative Action employer
fully dedicated to achieving a diverse faculty and staff. All qualified
candidates are encouraged to apply and will receive consideration for
employment without regard to race, sex, sexual orientation, age, religion,
national origin, marital status, veteran status, disability or other
categories protected by law.


----------------------------------------------------

From: Joshua C. Corrette-Bennett <corretjc@westminster.edu>
Date: Mon, Sep 10, 2012 at 3:23 PM
Subject: Tenure-track Position: Computational Biology & Bioinformatics

BIOLOGY. The Westminster College Department of Biology invites applications
for a tenure-track position at the Assistant Professor level in Computational
Biology & Bioinformatics to begin fall, 2013. Responsibilities will
include, but are not limited to, teaching introductory courses for majors
and developing and teaching an intermediate level course that focuses on
the application of computational biology to a range of fields within the
biological sciences.  Applicants with background and interest in teaching a
course in Biostatistics & Experimental Design will be strongly considered,
as will those with specialization in the area of epidemiology. In addition,
the candidate will be expected to contribute to introductory biology courses
for non-majors and to the College's Liberal Studies program. The successful
candidate will exhibit versatility, dedication to quality teaching and
advising in a liberal arts environment, teaching and research experience
in at least one area of expertise mentioned above, and a strong commitment
to undergraduate research.

Westminster College is a coeducational, national liberal arts institution with
historical ties to the Presbyterian Church (USA). The College enrolls about
1,500 full-time students and employs approximately 115 full-time faculty. 
Located in rural western Pennsylvania, Westminster is within a short drive
to both Pittsburgh and Cleveland. The Department of Biology possesses both
excellent teaching and research facilities, including a modern science
building together with 120 acres of outdoor resources adjacent to the
main campus.

The department requests that applicants send a cover letter, unofficial
academic transcripts, curriculum vita, and statements of teaching philosophy
and research experience. Applicants should arrange to have three letters of
recommendation sent separately. Evaluation of applications will begin October
5th, 2012. Send materials to Dr. Joshua Corrette-Bennett, Chair, Department
of Biology, Westminster College, New Wilmington, PA, 16172-0001.  EOE


----------------------------------------------------

From: Monica Rees <monica.rees@fishsciences.net>
Date: Fri, Sep 7, 2012 at 5:34 PM
Subject: Biologist III / Biologist IV: Fish Scientist, Cramer Fish Sciences

Cramer Fish Sciences is a small and personal consulting company with a 25 year
track record and organized around a core of senior scientists with reputations
for excellence in their disciplines. We work on applied scientific projects
involving fish assessment and fish resource problems throughout the western
U.S. from California to Alaska. Our specialty is the study of fish populations
and communities, their relationships with habitat and environmental features,
and the effects of fish, water, and habitat management actions. We are known
for delivering advanced scientific solutions that balance fish populations
and fisheries with multiple co-existing resource uses. Learn more about us
at www.fishsciences.net.

Cramer Fish Sciences is seeking an experienced Fish Biologist to help complete
a wide variety of interesting and challenging projects currently in progress
or under development.  This position is ideal for the person who has proven
themselves as an effective biologist and is ready to apply their skill at a
higher level on a broader playing field. Work in a flexible and empowering
environment with our team of scientists on projects throughout the West Coast.

Location: Gresham, Oregon

Position Description:
CFS is seeking an individual with strong quantitative skills and experience in
fish science and resource management. Position responsibilities may include
project planning, project supervision, scientific research and literature
review, sampling and experimental design, data collection and synthesis,
database management, statistical analysis, report and paper writing,
and presentations to other scientists, clients, and public or private
stakeholder groups. Work may involve studies of fish status, behavior,
population dynamics, limiting factors, habitat use, species interactions,
environmental variability or human effects. Recent projects have included
fish population assessment, migration and survival analysis, conservation
and recovery planning, ESA consultations, habitat assessment, watershed
analysis, population and habitat modeling, habitat and streamflow effects,
hatchery evaluations and plans, fishery management and sustainability,
telemetry and remote sensing, and spatial analysis of fish and habitat.

Project development and execution is a primary part of this position and
includes:
 . Lead or independently complete small to moderate sized projects as assigned.
 . Independently complete significant portions of larger projects as assigned.
 . Assist with identification of objectives, scope of work, and budgets.
 . Assign, review, approve, and evaluate work of professional and technical
   staff.
 . Coordination and reporting of activities and results.
 . Occasional work with existing and potential clients to develop additional
   projects.

Minimum Qualifications:
 . Master's degree in a natural resources-related field.
 . Minimum of five years of experience relevant to the position
 . Experience leading small to moderate sized projects.
 . Excellent computer skills including word processing, spreadsheets,
   databases, statistical programs, and presentations software.
 . Excellent written and verbal communication skills including technical
   writing, one-on-one discussions, and scientific presentations.
 . Strong communication, time management and organizational skills.
 . Highly-motivated, self-starter who can work independently and as part
   of a team.

Requirements:
The applicant must produce high-quality work, be able to meet objectives and
deadlines, and have a strong commitment to meeting the goals of the project
within the budgeted time frame. Technical writing, presentation, problem
solving and quantitative analysis skills and abilities are essential to this
position. The candidate should have strong organizational and interpersonal
skills, and be able to work collaboratively with team members to solve
problems. The candidate must have the ability to handle multiple tasks
with overlapping deadlines. Applied experience with West Coast anadromous
or resident species such as salmon, trout, or sturgeon is a plus.

Compensation and Benefits:
Compensation is a combination of base salary plus bonuses. Base salary
ranges between $63,186 and $72,546 annually depending on qualifications of
the successful applicant.  Quarterly bonuses typically add 20-30% to the
base wage of this position.

CFS provides generous benefits for its employees, including employer
paid insurance for an individual employee of medical/RX, dental, vision,
life insurance, long term disability and opportunity for a Health Savings
Account or a Flexible Spending Account. CFS also has a 401k program and
has established an Employee Stock Ownership Plan so employees will have a
vested interest in the future of CFS.

In addition to these benefits CFS offers paid vacation and holidays.

Open: Until Filled
Position Start Date: Immediately
Email Cover letter and Resume to:
Frieda Christopher at christopher@fishsciences.net
Full posting at: www.fishsciences.net


----------------------------------------------------

From: <s.dabon@jobtarget.com>
Date: Mon, Sep 10, 2012 at 4:52 PM
Subject: Computational Modeling Scientist: St. Jude Children's Research Hosp

Computational Modeling Scientist
Memphis, TN

St. Jude Children's Research Hospital, located in Memphis, Tennessee,
is a premier center for research and treatment of potentially fatal
childhood diseases, including cancer and certain blood, genetic, and
immunodeficiency disorders. The hospital's mission is to advance cures, and
means of prevention, for pediatric catastrophic diseases through research
and treatment. St. Jude is dedicated to providing unsurpassed patient care
and to advancing the health of children through biomedical research.

St. Jude Children's Research Hospital has an opening for a Computational
Modeling Scientist (Job Number 30906).

The Computational Modeling Scientist designs and develops experiments for
quantitative characterization of solid tumor dynamics and cancer biology
for multi-scale computational modeling of solid tumor growth and evolution.
Coordinates a complex set of experiments, including designing pre-clinical
trials and processes and analyzing the collected data. Designs, implements
and validates predictive multi-scale computational models of solid tumors.

Responsibilities: 1. Designs, performs and supervises in vivo and ex
vivo tumor microscopy experiments. a. Coordinates between the various
institutional core facilities involved. b. Coordinates with the light
microscopy core facility in particular. c. Participates in the design and
implementation of equipment 2.  Designs and develops image processing and
analysis of multi-dimensional experimental data. a. Works with digital
whole slide scanners (Aperio/Leica). b.  Develops tissue classifiers
using genetic algorithms. c. Processes experimental imaging data into
quantitative parameters. 3. Analyzes genomic data (Affymetrix, etc...) for
integration into the computational model. 4. Develops multi-scale predictive
computational models of solid tumor growth and cancer evolution using
multi-scale experimental data. a. Integrates various data types into
a single computational framework. b. Designs and optimizes CompuCell3D
code accordingly.  c. Works with software engineer to efficiently run
code on institutional clusters. 5. Uses computational models to suggest
new experiments and generate hypotheses of heterogeneity in solid tumor
growth and evolution. 6. Assists in preparation of grant proposals, journal
publications, and presentations for professional meetings. 7. Trains and
supervises computer scientists, research assistants and graduate students
participating in the project. 8. Performs other duties as assigned to meet
the goals and objectives of the department and institution.

Job Requirements

Requirements:

 *  Ph.D. in physics, systems biology, mathematical biology or a closely
    related field is required.
 *  Four (4) years of experience in multi-scale computational biology and
    modeling. One (1) year of experience in multi-photon microscopy.
 *  Knowledge of computational biology tools (CompuCell3D, SBW, vCell, etc...)
 *  Knowledge of partial differential equations software packages (Trilinos,
    COMSOL, etc...)
 *  Knowledge of image processing softwares (Imaris, Aperio Genie, Matlab,
    FIJI/ImageJ, etc...)
 *  Knowledge of C/C++, Python and/or Java.

    St. Jude offers a positive working culture, professional advancement, &
    competitive compensation. Qualified applicants may apply for this position
    or others via our online process at www.stjude.org/jobs

    St. Jude is an Equal Opportunity Employer and a Drug-Free Workplace

    Candidates receiving offers of employment will be subject to
    pre-employment drug testing and background checks.


----------------------------------------------------

From: "Owens, Roland (NIH/OD) [E]" <owensrol@mail.nih.gov>
Date: Thu, 6 Sep 2012 15:17:48 -0400
Resent-from: Raymond Mejía <mejiar@helix.nih.gov>
Subject: NIH Research and other Scientific/Clinical Positions, September Update

Staff Scientist
Center for Cardiovascular Genomics, NHLBI
(deadline:  September 20)

The Center for Cardiovascular Genomics (CCVG) of the National Heart, Lung,
and Blood Institute (NHLBI) at the National Institutes of Health invites
applications for a Staff Scientist position.  We seek a highly motivated,
creative and bright individual with expertise in statistical genetics and/or
bioinformatics who is interested in a range of human epidemiology and genetic
epidemiology studies.  The candidates must hold a Ph.D. degree or equivalent
with at least 5 years of postdoctoral experience. A good track record
of productivity judged by peer reviewed publications is recommended. The
successful candidate must have a strong background in statistical genetic
analysis and/or bioinformatics analyses of genetic/genomic epidemiology
research projects.

Specialized experience should include significant experience in large-scale
data analysis, data integration, data mining, optimization techniques,
algorithm design and development, and data visualization as evidenced by
citable publications. Additionally, expertise in statistical work, such as
computing and analyzing large genotype and phenotype datasets, managing
large-scale human genome sequence data, and applying known statistical
techniques to epidemiology and genetic data, including genomewide association
data from human populations is required.  Experience with analysis of gene
expression, metabolomic and/or proteomic data is recommended but not required.

In addition to innovative and independent research in integrative
computational biology and/or cutting edge statistical genetics, the successful
candidate will take an active role in supporting other members of the
Center and will participate in a cooperative effort to accomplish program,
division, and Institute goals.  The successful candidate will be offered a
competitive salary commensurate with experience and qualifications. The
initial appointment will be for a minimum of 2 years, with possible
appointment renewals in 1-year increments. Appointees must be US citizens,
resident aliens, or nonresident aliens with a valid employment visa. 

Applicants  should  submit a cover  letter  highlighting  key  qualifications,
a current  curriculum vitae  with  complete  bibliography, three reference
letters, a one-page summary  of the applicant's philosophy of core facility
operation, and a list of three publications that provide evidence of
relevant skills along with corresponding PDF copies of these publications
by September 20 to:  Marcia Lobos, Executive Assistant to Dr. Christopher
J. O'Donnell, CCVG, NHLBI, at NHLBI_CCVG_RecruitStaffScientist@mail.nih.gov. 
The advertisement will remain open until the position is filled.  PDF versions
of documents sent by electronic mail are strongly preferred.   HHS and NIH
are Equal Opportunity Employers.  Applications from women, minorities and
persons with disabilities are strongly encouraged to apply. The NHLBI/NIH
is a smoke free workplace.

 
Trans-NIH Earl Stadtman Tenure-Track Investigator Search
(deadline:  October 1)

The National Institutes of Health, the U.S. government's premier biomedical
and behavioral research enterprise, is pleased to announce its fourth annual
call for 'NIH Earl Stadtman Investigators.' Scientific discoveries from our
intramural laboratories, with their extensive infrastructure and critical
mass of expertise, have a crucial role in both maintaining America's research
excellence and advancing medical treatments and cures.

Come join the team whose hallmarks are stable funding, intellectual freedom,
shared resources, and access to a broad range of scientific expertise. We
seek creative and independent thinkers eager to take on high-risk,
highimpact research in tenure-track positions.  A variety of basic and
translational/clinical positions are available, with areas of active
recruitment including (but not limited to): Biostatistics/Bioinformatics;
Chromatin Biology/Epigenetics; DNA Replication, Repair and Recombination;
Molecular Epidemiology and Population Genetics; Molecular Immunology;
Molecular Pharmacology and Toxicology; Neuroscience; Population Science;
Stem Cells/iPS Cells; Structural Biology and Systems Biology; and Virology.

Who we are: Among our approximately 1,200 principal investigators and 4,000
trainees are world-renowned experts in basic, translational and clinical
research. Our strength is our diversity in pursuit of a common goal, to
alleviate human suffering from disease. Similar to academia, we offer our
scientists the opportunity to mentor outstanding trainees at all levels
(e.g., graduate students and postdoctoral fellows) in a research setting.

Whom we seek: For this broad, trans-NIH recruitment effort, we seek talented,
early-career scientists with a clear and creative research vision who wish
to contribute to the nation's health.

Qualifications/eligibility: Candidates must have an M.D., Ph.D.,
D.D.S./D.M.D., D.V.M, D.O., R.N./Ph.D., or equivalent doctoral degree
and have an outstanding record of research accomplishments as evidenced
by publications in major peer-reviewed journals. Applicants may be in
early stages of their research careers or non-tenured early-to-mid career
scientists. Appointees may be U.S. citizens, resident aliens, or non-resident
aliens with, or eligible to obtain, a valid employment-authorization visa.

How to apply: Applicants must submit a CV, a three-page research plan, a
one-page description of their vision for future research and its potential
impact, and contact information for three professional references through
our online application system at http://irp.nih.gov/stadtman between August 1
and October 1, 2012. You will be asked to designate a primary and secondary
scientific area of expertise to aid in assigning your application to the
appropriate review committee. Requests for letters of recommendation will be
sent to your references when you submit your application. Reference letters
will be accepted via upload to the website until 11:59 p.m. EDT October 15,
2012. We cannot accept paper applications.

What to expect: Search committees of subject-matter experts will review
and evaluate applicants based on the following criteria: publication
record, scientific vision and potential scientific impact of current and
proposed research, demonstrated independence, awards and references. The
committees will identify the most highly qualified candidates to invite
to the NIH for a lecture in November or December 2012, which will be open
to the NIH scientific staff, and for subsequent interviews with the search
committees. The search committee chairs and NIH Scientific Directors, who
lead our intramural programs, will identify finalists to be recruited as
Earl Stadtman Investigators.  Candidates not selected as Stadtman finalists
can still be considered for other open NIH research positions. The entire
process from application review to job offer may take several months,
depending on the volume of applications.

We call upon individuals who will open our eyes to possibilities we haven't
yet envisioned, to complement our scientific mission and enhance our research
efforts. More information about our program is at http://irp.nih.gov. The
inspiring story of Earl and Thressa Stadtman's research at the NIH is at
http://history.nih.gov/exhibits/stadtman. Specific questions regarding this
recruitment effort may be directed to Dr. Roland Owens, Assistant Director,
NIH Office of Intramural Research, at owensrol@mail.nih.gov. DHHS and NIH
are Equal Opportunity Employers.


The NIH Intramural Research Program
http://irp.nih.gov/
http://irp.nih.gov/careers/tenured-and-tenure-track-scientific-careers

Link to Fellowships and Positions of Interest to fellows
https://www.training.nih.gov/
https://www.training.nih.gov/career_services/jobs



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