SMB Digest August 19, 2015 Volume 15 Issue 33
ISSN 1086-6566
Editor: Richard Schugart richard(dot)schugart(at)gmail(dot)com
Note:
Information about the Society for Mathematical Biology, including an
application for membership, may be found in the SMB Home Page,
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Issue's Topics:
Conference: Modeling & Control of..., Jan 11-14, Rio de Janeiro
Open-Access Textbook: Modeling & Analysis of Complex Systems
Post-doc: Comp. Biol., Mount Sinai School of Medicine, New York
Post-docs: Optimal Control of PDEs, U Graz & Radon Inst., Linz
Post-docs: Mathematical Biology, NIMBioS, U Tennessee
Tenure-Tracks: Medical & Biomedical Physics, U British Columbia
SMBnet Reminders
----------------------------------------------------
From: bliman <pierre-alexandre.bliman@inria.fr>
Date: August 18, 2015 at 1:01:55 PM
Re-Sent From: ELADDADI, AMINA <eladdada@mail.strose.edu>
Subject: Conference: Modeling & Control of..., Jan 11-14, Rio de Janeiro
The Conference on Mathematical Modeling and Control of Communicable
Diseases will be held from Monday through Thursday, January 11-14, 2016
at Fundação Getulio Vargas (FGV), Rio de Janeiro, Brazil.
NEW!!! A selection of contributions presented during the Conference will
be published in a volume of the series "Springer Proceedings in
Mathematics and Statistics". The review process will take place after
the event, more information will be communicated whenever available.
The Conference will take place in the emblematic building of FGV created
by the architect Oscar Niemeyer in Praia de Botafogo, on the shore of
Guanabara Bay, at the foot of Sugar Loaf Mountain. Mini-courses will be
held on Monday, January 11, talks and poster presentation will take
place from Tuesday 12 to Thursday 14. The conference will followed by
satellite events on Friday, January 15, including the annual meeting of
the Brazilian network for modeling of Dengue fever.
The preliminary website is www.fgv.br/math-epidemics. This site will be
updated with further information. This site will be updated with further
information.
The contact email address is emap.eventos@fgv.br.
See the list of confirmed speakers, mini courses, important dates and
committees below. Also more information about the conference structure
and scopes are given at the end of the message.
Invited Speakers Plenaries (confirmed):
-Nicolas Bacaër, IRD, Bondy e UPMC, Paris, France
-Nick Britton, University of Bath, UK
-Bernard Cazelles, Ecole Normale Supérieure, Paris, France
-Cláudia Codeço, Fiocruz, Brazil
-Vittoria Colizza, INSERM e UPMC, Paris, France, e ISI Fundation, Turin,
Italy
-Christl Donnelly, Imperial College of London, UK
-Aaron King, University of Michigan, USA
-Eduardo Massad, USP, São Paulo, Brazil
-Mercedes Pascual, Michigan University, USA
-Michael Turelli, Davis University, USA
Mini Courses (confirmed):
-Patrick De Leenheer, Oregon State University, USA
-Karl Sigmund, Vienna University, Austria
-Michael Li, University of Alberta, Canada
Important Dates:
-Abstract submission deadline: August 24th, 2015
-Author notification deadline: October 9th, 2015
-Final manuscripts due: November 9th, 2015
-Author registration deadline: December 10th, 2015
-Earlybird registration deadline: December 10th, 2015
-Mini-courses: January 11th, 2016
-Conference: January 12th-14th, 2016
-Satellite events: January 15th, 2016
Chairs:
-Pierre-Alexandre Bliman, EMAp/FGV, Brazil & Inria, France (organization
chair);
-Jorge Zubelli, IMPA, Brazil (scientific chair)
Scientific committee:
-Nick Britton, Univ. of Bath, UK
-Flávio Coelho, FGV, Brazil
-Eduardo Massad, USP, Brazil
-Benoît Perthame, Inria, France
-Gauthier Sallet, Inria, France
-Max Souza, UFF, Brazil
-Cláudio Struchiner, Fiocruz, Brazil
-Michael Turelli, Davis Univ., USA
-Jorge Zubelli, Chair, IMPA, Brazil
Organizing committee:
-Maria Soledad Aronna, EMAp/FGV, Brazil
-Pierre-Alexandre Bliman, EMAp/FGV, Brazil & Inria, France
-Sabrina Camargo, EMAp/FGV, Brazil
-Flávio Codeço Coelho, EMAp/FGV, Brazil
-Daniel Antunes Maciel Villela, Fiocruz, Brazil
-Moacyr Alvim Horta Barbosa da Silva, EMAp/FGV, Brazil
-Max Souza, UFF, Brazil
Further information:
Characterized by its boldness and pioneering spirit, FGV is a world
renowned center for quality education dedicated to promoting Brazil's
economic and social development, ranked one of the Top 25 Think Tanks
and Top 100 higher education institutions in the world. IMPA, the
federal research and educational institution widely considered to be the
foremost in Brazil in the area of mathematics (through LAMCA, the
Laboratory of Analysis and Modeling in the Applied Sciences); Fiocruz,
the most prominent institution of science and technology in health in
Latin America; Universidade Federal Fluminense, one of the four
federally funded public universities of the State of Rio de Janeiro; and
Inria, the French research institute dedicated to computational
sciences, co-organize the meeting.
The objective of the organizers is to bring together researchers and
students working on the modeling of human transmissible diseases,
considered in the most extensive sense. Interested academics from a
large spectrum of applied mathematics are expected, with interest
ranging from mathematical epidemiology to statistics, from dynamical
systems to control theory, at the borders of biology (including
entomology and immunology), ecology, or even economy or climatology. The
scope of the event is to provide comprehensive vision of the questions
and methods raised by the mathematical modeling of transmissible
diseases, from theory to application and back: model analysis,
experimental data analysis, qualitative behaviors, control strategies,
game theory are among the different approaches that are most welcome.
One may forecast a substantial interest for the modeling of endemic
tropical diseases (such as dengue fever, yellow fever, chikungunya,
malaria, leishmaniasis...) and of major global epidemics (e.g.
influenza, Ebola fever, HIV...), but the workshop is open to studies on
all types of transmissible human pathologies. The topics include, but
are not limited to, the following:
1. Spatial and seasonal aspects of epidemics
2. Control methods
3. Statistical modeling and parameter estimation methods
4. Qualitative behaviors and general tools from dynamical system theory
5. Evolutionary game theory, phylogenetics
6. Modeling in epidemiology and neighboring fields: sociology,
immunology, environment and ecology, climatology, economy, public
health...
The Conference will feature contributed papers for oral or poster
sessions, including invited and tutorial. Apart from providing a forum
for the presentation of new results, the workshop aims at offering a
strong tutorial content. It will host ten plenary talks, delivered by
some of the best specialists worldly, and will be preceded by three
mini-courses devoted to more focused topics. Undergraduate students, as
well as PhD students, from Brazil or abroad, are strongly encouraged to
participate and will receive attendance certificate. Free entrances to
the social dinner will be awarded to the authors of the Best Student
Poster and to the Best Student Paper.
----------------------------------------------------
From: Hiroki Sayama <sayama@binghamton.edu>
Date: August 13, 2015 at 4:52:15 PM
Subject: Open-Access Textbook: Modeling & Analysis of Complex Systems
New Open-Access Textbook:
Introduction to the Modeling and Analysis of Complex Systems
Hiroki Sayama
(Open SUNY Textbooks)
http://textbooks.opensuny.org/introduction-to-the-modeling-and-analysis-of-complex-systems/
"Introduction to the Modeling and Analysis of Complex Systems"
introduces students to mathematical/computational modeling and analysis
developed in the emerging interdisciplinary field of Complex Systems
Science. Complex systems are systems made of a large number of
microscopic components interacting with each other in nontrivial ways.
Many real-world systems can be understood as complex systems, where
critically important information resides in the relationships between
the parts and not necessarily within the parts themselves.
This textbook offers an accessible yet technically-oriented introduction
to the modeling and analysis of complex systems. The topics covered
include: fundamentals of modeling, basics of dynamical systems,
discrete-time models, continuous-time models, bifurcations, chaos,
cellular automata, continuous field models, static networks, dynamic
networks, and agent-based models. Most of these topics are discussed in
two chapters, one focusing on computational modeling and the other on
mathematical analysis. This unique approach provides a comprehensive
view of related concepts and techniques, and allows readers and
instructors to flexibly choose relevant materials based on their
objectives and needs. Python sample codes are provided for each modeling
example.
----------------------------------------------------
From: Bunyavanich, Supinda <supinda.bunyavanich@mssm.edu>
Date: August 14, 2015 at 10:32:34 AM
Subject: Post-doc: Comp. Biol., Mount Sinai School of Medicine, New York
Postdoctoral Fellow or Senior Scientist-Computational Biology
Description:
The Mount Sinai School of Medicine in New York City is seeking a
talented, self-motivated individual to participate in cutting edge
research as a member of the Bunyavanich Lab at the Institute for
Genomics and Multiscale Biology. The Institute is led by Dr. Eric
Schadt. The successful applicant will be part of an interdisciplinary
team led by Dr. Supinda Bunyavanich that applies computational analysis
and bioinformatics to interpret multi-scale data generated from subjects
with asthma and allergic diseases.
Responsibilities:
-Analyze next generation sequencing data, including whole genome,
RNA-Seq, 16S rRNA, metagenome, and methylation data.
-Develop and implement statistical methods and software to analyze next
generation sequencing data for genetic risk, disease mechanism, and drug
response. Projects will include network construction and mining.
-Integrate and translate genetic, genomic, eQTL, structural, and
clinical data into novel diagnostics, therapeutics and disease
mechanisms
-Maintain complex next generation sequence and array datasets linked to
clinical data.
-Communicate progress with PI regularly and contribute to the success of
the research team.
-Develop and maintain productive collaborations within Mount Sinai and
with outside researchers in academia and industry.
-Publish and present novel research findings in academic journals and
conferences.
-Some supervision of trainees and technical staff may also be required.
Requirements:
-PhD in bioinformatics, computer science, computational biology,
genomics, or a related field.
-Outstanding programming skills in R, Perl, Python, Java, C++, and Unix
shell scripting.
-Excellent track record of analyzing next generation sequencing data.
Experience in network analysis a plus.
-Demonstrated knowledge of statistics, statistical genetics,
bioinformatics concepts, methods and tools. Familiarity with genomic
data tools, repositories, and databases.
-Strong attention to detail and solid analytical skills.
-Ability to work hard and independently while contributing to the team
effort and adhering to deadlines.
-Excellent oral and written communication skills with track record of
productive collaborations.
-Demonstrated ability to work concurrently on several projects, and good
understanding of analytic complexities to do independent research as
well as assist other researchers.
Interested and qualified candidates should submit a CV and cover letter
to Dr. Supinda Bunyavanich (Supinda.Bunyavanich at mssm.edu).
Please visit the Bunyavanich lab for more information on our research
group.
The Institute for Genomics and Multiscale Biology at the Icahn School of
Medicine at Mount Sinai seeks to comprehensively integrate the digital
universe of information into research, training, and patient care and to
develop programs that prepare students for careers in the future of
healthcare and data science.
----------------------------------------------------
From: Russold, Thomas <thomas.russold@uni-graz.at>
Date: August 17, 2015 at 5:55:41 AM
Subject: Post-docs: Optimal Control of PDEs, U Graz & Radon Inst., Linz
POSTDOC POSITIONS within the ERC-Advanced Grant
"From Open to Closed Loop Optimal Control of PDEs"
Institute of Mathematics and Scientific Computing
University of Graz, and
Radon Institute, Linz, Austrian Academy of Sciences
About the project: While the project addresses a broad spectrum in
optimal control of PDEs, it also focusses on some of the most pressing
topics: Non-smooth, non-convex optimal control and computational
techniques for feedback control. Applications include the bidomain
equations, which are the established model to describe the electrical
activity of the heart.
Professional qualifications: Doctoral degree in a mathematical branch of
study. Solid knowledge in applied mathematics, including PDEs, with
specialization in either analytical or computations techniques.
Specialization in optimal control, calculus of variations, or
optimization is very welcome.
Contact person and grant holder:
Prof. Karl Kunisch, University of Graz and Radon Institute, Austrian
Academy of Sciences,
E-mail: karl.kunisch@uni-graz.at
Official starting date: January 1, 2016
Applications with a detailed CV including a publication list and a
compact statement of past achievements and research interests should be
sent to: thomas.russold@uni-graz.at.
Application Deadline: will be announced
----------------------------------------------------
From: Catherine Crawley <ccrawley@nimbios.org>
Date: August 17, 2015 at 11:31:25 AM
Subject: Post-docs: Mathematical Biology, NIMBioS, U Tennessee
Deadline Approaching! Call for Postdoctoral Fellowship Applications at
NIMBioS -- Next Deadline: September 1, 2015
The National Institute for Mathematical and Biological Synthesis
(NIMBioS), located at the Univ. of Tennessee, Knoxville, is currently
accepting applications for postdoctoral scholarship at the interface
between mathematics and biology. Highest priority will be given to those
with explicit plans to develop their ability to effectively carry on
research across these fields. We are particularly interested in requests
to support research that integrates diverse fields, requires synthesis
at multiple scales, and/or makes use of or requires development of new
mathematical/computational approaches. NIMBioS Postdoctoral Fellows are
chosen based upon indications that the applicant's research plans are
consistent with the mission of NIMBioS, the applicant has the
demonstrated ability to carry out the proposed research, and the
opportunities provided through NIMBioS will enhance the capacity for the
research to be completed in an efficient and timely manner.
Support: annual stipend of $51,000, full University of Tennessee
employee fringe benefits, and an annual travel allowance of $3,000.
How to apply: Complete the online application and submit a brief project
description, references, and CV following the guidelines available at
http://www.nimbios.org/postdocs/
Deadline: NIMBioS postdoctoral requests for support are reviewed two
times per year, and the selected researchers are offered positions at
NIMBioS where they conduct research that is mostly self-directed. The
deadline for activities beginning in summer/fall 2016 is September 1,
2015 but applications for positions starting later in 2016 are also
accepted at this time. All letters of recommendation must be submitted
before the request deadline.
The National Institute for Mathematical and Biological Synthesis
(NIMBioS) (http://www.nimbios.org) brings together researchers from
around the world to collaborate across disciplinary boundaries to
investigate solutions to basic and applied problems in the life
sciences. NIMBioS is sponsored by the National Science Foundation, with
additional support from The University of Tennessee, Knoxville.
----------------------------------------------------
From: Rebecca Tyson <rebecca.tyson@ubc.ca>
Date: August 17, 2015 at 1:55:22 PM
Subject: Tenure-Tracks: Medical & Biomedical Physics, U British Columbia
University of British Columbia - Okanagan Campus Irving K. Barber School
of Arts and Sciences (Job ID 19808).
PHYSICS - Two Assistant Professors (tenure-track) - Medical and
Biomedical Physics
The Irving K. Barber School of Arts and Sciences at the University of
British Columbia, Okanagan Campus, invites applications for two
tenure-track appointments at the rank of Assistant Professor, to begin
as early as July 1, 2016. The positions will be held in Unit 5 in the
Barber School (http://web.ubc.ca/okanagan/ikbarberschool/welcome.html).
UBC is consistently ranked among the world's top 40 universities, and
the UBC system comprises two distinct and autonomous campuses in the
province of British Columbia - one in Vancouver and the other in
Kelowna. Situated in the Okanagan Valley in the southern interior of the
province, Kelowna is experiencing rapid growth and is considered one of
the most desirable regions to live in Canada.
The physics department at UBC Okanagan is part of a dynamic and highly
interdisciplinary unit of more than 25 faculty members in the areas of
Physics, Mathematics, Computer Science and Statistics. The successful
candidates will each have a PhD in Physics, a strong research record,
and demonstrated excellence in and commitment to undergraduate and
graduate teaching. Preference will be given to candidates specializing
in any broad areas relating to (i) radiation oncology or imaging medical
physics; (ii) molecular imaging and biomedical physics with potential
applications to radiation oncology; or (iii) computational biomedical
physics. The Unit is developing a medical physics graduate program under
a joint collaboration with the BC Cancer Agency - Centre for the
Southern Interior (BCCA-CSI). This process will include application to
CAMPEP (www.campep.org) for accreditation of the program. The department
has active research in radiation oncology physics, medical imaging,
biological applications, and data science, and offers a suite of related
graduate courses. Contribution to the research mandate of the
department, including the continued development of the medical physics
graduate program is expected. The ability to integrate your scholarship
into ongoing research activities at the BCCA-CSI and/or within UBCO
Faculties, and to enhance existing research strengths in Physics, Data
Science, and Engineering, is strongly desired.
Further information can be found at
http://medicalphysics.ok.ubc.ca/welcome.html, http://physics.ok.ubc.ca/welcome.html, http://engineering.ok.ubc.ca/welcome.html.
----------------------------------------------------
Subject: SMBnet Reminders
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